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A164057 Complement to A164056, change A164056 bits (0->1; 1->0). Provides a coding template for Petoukhov matrices, relating to DNA codons. +0
7
1, 1, 0, 1, 0, 0, 1, 1, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 1, 1 (list; table; graph; listen)
OFFSET

0,1

COMMENT

Sequences by rows can be used as mapping tools for generating Gray code maps.

Jay Kappraff alerted me to the connection between the multiplication version

(below) and the 2*3 multiplication table of A036561, in that the terms of the

multiplication table (below): (27, 18, 12, 8) are seen as a diagonal in:

1...3,...9,...27,...

2,..6,..18,.........

4..12...............

8...................

.

We may recreate the top row (below): (27, 18, 12, 18, 12, 8, 12, 18), by

starting at "27" in the above array, then given the code (1,0,0,1,0,0,1,1),

and (8, 12, 18, 27), we mark down the term to the left if the code = 0, (1

otherwise), giving "27" then L,L,R,L,L,R,R or: (27, 18, 12, 18, 12, 8, 12, 18)

Such operations preserve the harmonic character of the isomorphic array in

terms of multiplication or division by (2/3) or (3/2) linked to the 2*3

multiplication table. The Gray code map preserves the "one operation"

procedure as well as a binomial distribution as to frequency.

The 8*8 array below with top row [27, 18, 12, 18, 12, 8, 12, 18]...

has been investigated extensively by Petoukhov, relating to the 64 DNA

codons (Cf. A164091, A147995). Petoukhov has made the remarkable discovery

that such (Petoukhov matrices) can be generated as squares of matrices

with irrational terms, in this case phi, 1.618...

REFERENCES

Sergei Petoukhov and Matthew He, "Symmetrical Analysis Techniques for Genetic Systems and Bioinformatics - Advanced Patterns and Applications", IGI Global, (978-1-60566-127-9); October, 2009, Chapters (2, 4, and 6) Clifford Pickover, "The Zen of Magic Squares, Circles, and Stars", Princeton University Press, 2002, pages 285-289.

FORMULA

By rows, change bits of A164056: (0->1); (1->0). Note that A164056 can be

derived from 2^n strings of Gray code terms by recording the number of 1's

in the Gray code terms for n, followed by the rule "1" is recorded if

next term is greater than current; 0 otherwise.

EXAMPLE

First few rows of the triangle in 2^n term strings:

1;

1, 0;

1, 0, 0, 1;

1, 0, 0, 1, 0, 0, 1, 1;

1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 1, 1;

...

Given the 16 bit Gray code string (0,...->15): 0000, 0001, 0011, 0010, 0110,

0111, 0101, 0100, 1100, 1101, 1111, 1110, 1010, 1011, 1001, 1000; the number

f of 1's per term = (0, 1, 2, 1, 2, 3, 2, 1, 2, 3, 4, 3, 2, 3, 2, 1). Then

using the increase/decrease rule, we get row 5 of A164056

.

0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 0, 1, 0, 0 = row 5 of A164056. Change to

1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 1, 1 = row 5 of A164057.

.

We may use row 3 to generate arrays that make use of the terms by addition

or multiplication: By addition: we recreate an array of the number of

hydrogen bonds per codon/anti-codon (Cf. A147995, the 64 codons mapped on

a Gray code format). Beginning with "9" and using row 4: (1,0,0,1,0,0,1,1);

we increase by 1 starting from left if we encounter a 1, and decrease by 1

if the next term = 0. We get: (9, 8, 7, 8, 7, 6, 7, 8) = A. Next, the same

sequence A along the left border and 9's as the diagonal. Given upper left

term = (1,1), for odd numbered columns (n), begin at position (n,n) and

circulate A downward. For even numbered columns, circulate A upward.

This gets us:

.

9, 8, 7, 8, 7, 6, 7, 8

8, 9, 8, 7, 6, 7, 8, 7

7, 8, 9, 8, 7, 8, 7, 6

8, 7, 8, 9, 8, 7, 8, 7

7, 6, 7, 8, 9, 8, 7, 8

6, 7, 8, 7, 8, 9, 6, 7

7, 8, 7, 6, 7, 8, 9, 8

8, 7, 6, 7, 8, 7, 8, 9

.

As shown, (for example), column 4 begins at (4,4), then circulates upwards

with sequence A. Last, we superimpose the hydrogen bond array on the DNA

array as shown in A147995. Mapping the terms according to the Gray code

rules preserves the "1" rule in any Knights's move direction including wrap-

arounds: Every neighbor differs from any entry by "1" by addition or subtraction.

Note that in the previous array, (6, 7, 8, 9) may be obtained by the

appropriate addition of terms (2 or 3). In the next example,

we use the rows to generate A164091, (which I name Petoukhov matrices) as follows:

.

Again, we refer to row 5: (1, 0, 0, 1, 0, 0, 1, 1) and given the upper left

term of an 8x8 array = (1,1), we begin with "27" (= 3*3*3 rather than 3+3+3

= 9 as in the addition case. Then, when encountering an 0, multiply current

term by (2/3). If the next term = 1, multiply current term by (3/2). Then

use the identical circulate rule using "B" = (27, 18, 12, 18, 12, 8, 12, 18)

since given (1, 0, 0, 1, 0, 0, 1, 1) and "27", the next term (an 18) = (2/3)

* 27, followed by 12 = (2/3)*18, etc; getting: (Cf. A164091):

.

27, 18, 12, 18, 12, 08, 12, 18

18, 27, 18, 12, 08, 12, 18, 12

12, 18, 27, 18, 12, 18, 12, 08

18, 12, 18, 27, 18, 12, 08, 12

12, 08, 12, 18, 27, 18, 12, 18

08, 12, 18, 12, 18, 27, 18, 12

12, 18, 12, 08, 12, 18, 27, 18

18, 12, 08, 12, 18, 12, 18, 27

.

Both the addition case and the multiplication case have a binomial frequency

of terms by rows and columns: (one 9, three 7's, three 8's and one 6); while

the multiplication case has (one 27, three 18's three 12's and one 8). Both

versions preserve the Gray code "one operation" rule in any Knight's move

including wrap arounds, since given the second case, any neighbor may be

obtained by multiplication of (2/3) or (3/2).

CROSSREFS

A036561, A147995, A164056, A164091

Sequence in context: A033778 A055088 A068427 this_sequence A140820 A167501 A147612

Adjacent sequences: A164054 A164055 A164056 this_sequence A164058 A164059 A164060

KEYWORD

nonn,tabl

AUTHOR

Gary W. Adamson (qntmpkt(AT)yahoo.com), Aug 09 2009

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